Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction
Liangqi Xie, Peng Dong, Xingqi Chen, Tsung-Han S. Hsieh, Sambashiva Banala, Margherita De Marzio, Brian P. English, Yifeng Qi, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon, Wesley R. Legant, Anders S. Hansen, Anton Schulmann, Rafael Casellas, Bin Zhang, Eric Betzig, Luke D. Lavis, Howard Y. Chang, Robert Tjian✫, Zhe Liu✫ 3D ATAC-PALM: Super-resolution Imaging of the Accessible Genome
Anand Ranjan, Vu Q. Nguyen, Sheng Liu, Jan Wisniewski, Jee Min Kim, Xiaona Tang, Gaku Mizuguchi, Ejlal Elalaoui, Timothy J. Nickels, Vivian Jou, Brian P. English, Qinsi Zheng, Ed Luk, Luke D. Lavis, Timothee Lionnet, Carl Wu
Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction
Liangqi Xie✶, Peng Dong✶, Yifeng Qi, Margherita De Marzio, Xingqi Chen, Sambashiva Banala, Wesley R. Legant, Brian P. English, Anders S. Hansen, Anton Schulmann, Luke D. Lavis, Eric Betzig, Rafael Casellas, Howard Y. Chang, Bin Zhang, Robert Tjian✫, Zhe Liu✫
Super-resolution Imaging Reveals 3D Structure and Organizing Mechanism of Accessible Chromatin Jonathan B. Grimm, Timothy A. Brown, Brian P. English, Timothée Lionnet, Luke D. Lavis Synthesis of Janelia Fluor HaloTag and SNAP-tag ligands and their use in cellular imaging experiments
In: Erfle H. (eds) Super-Resolution Microscopy. Methods in Molecular Biology, Vol.1663, Humana Press, New York, NY (2017) (paywall link)
Jonathan B. Grimm✶, Brian P. English✶, Heejun Choi, Anand K. Muthusamy, Brian P. Mehl, Peng Dong, Timothy A. Brown, Jennifer Lippincott-Schwartz, Zhe Liu, Timothée Lionnet✫, Luke D. Lavis✫ Bright photoactivatable fluorophores for single-molecule imaging Young J. Yoon✶, Bin Wu✶, Adina R Buxbaum, Sulagna Das, Albert Tsai, Brian P. English, Jonathan B. Grimm, Luke D. Lavis, Robert H. Singer Glutamate-induced RNA localization and translation in neurons Zhengjian Zhang✫, Brian P. English, Jonathan B. Grimm, Stephanie A. Kazane, Wenxin Hu, Albert Tsai, Carla Inouye, Changjiang You, Jacob Piehler, Peter G. Schultz, Luke D. Lavis, Andrey Revyakin, Robert Tjian Rapid Dynamics of General Transcription Factor TFIIB Binding During Preinitiation Complex Assembly Revealed by Single-Molecule Analysis Genes and Development 30, 2106-2118 (2016) (open access)
Luke D. Lavis✫, Jonathan B. Grimm, Brian P. English, Heejun Choi, Anand K. Muthusamy, Brian P. Mehl, Peng Dong, Timothy A. Brown, Jennifer Lippincott-Schwartz, Zhe Liu, Timothée Lionnet Bright photoactivatable fluorophores for single-molecule imaging bioRxiv 066779; doi: http://dx.doi.org/10.1101/066779 (July 29, 2016) (open access)  Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies Tatsuya Morisaki, Kenneth Lyon, Keith F. DeLuca, Jennifer G. DeLuca, Brian P. English, Zhengjian Zhang, Luke D. Lavis, Jonathan B. Grimm, Sarada Viswanathan, Loren L. Looger, Timothée Lionnet, Timothy J. Stasevich Real-time quantification of single RNA translation dynamics in living cells  Won-Ki Cho, Namrata Jayanth, Brian P. English, Takuma Inoue, J. Owen Andrews, William Conway, Jonathan B. Grimm, Jan-Hendrik Spille, Luke D. Lavis, Timothée Lionnet✫, Ibrahim I Cissé✫ RNA Polymerase II cluster dynamics predict mRNA output in living cells Zachary B. Katz✶, Brian P. English✶, Timothée Lionnet, Young J. Yoon, Nilah Monnier, Ben Ovryn, Mark Bathe, Robert H. Singer Mapping translation “hotspots” in live cells by tracking single molecules of mRNA and ribosomes Brian P. English, Robert H. Singer Tracking multiple single molecules in living cells Brian P. English✫, Robert H. Singer A three-camera imaging microscope for high-speed single-molecule tracking and super-resolution imaging in living cells Proc. SPIE 9550, Biosensing and Nanomedicine VIII, 955008 (invited paper) 10.1117/12.2190246 (2015) (free PMC article) (pdf) Nilah Monnier, Zachary Barry, Hye Yoon Park, Kuan-Chung Su, Zachary Katz, Brian P. English, Arkajit Dey, Keyao Pan, Iain M. Cheeseman, Robert H. Singer, Mark Bathe Inferring transient particle transport dynamics in live cells Nature Methods 12(9), 838–840 (2015) (free PMC article) Sarada Viswanathan, Megan E. Williams, Erik B. Bloss, Timothy J. Stasevich, Colenso M. Speer, Aljoscha Nern, Barret D. Pfeiffer, Bryan M. Hooks, Wei-Ping Li, Brian P. English, Teresa Tian, Gilbert L. Henry, John J. Macklin, Ronak Patel, Charles R. Gerfen, Xiaowei Zhuang, Yalin Wang, Gerald M. Rubin, Loren L. Looger High-performance probes for light and electron microscopy  Johnathan B Grimm, Brian P English, Jiji Chen, Joel P Slaughter, Zhengjian Zhang, Andrey Revyakin, Ronak Patel, John J Macklin, Davide Normanno, Robert H Singer, Timothée Lionnet✫, Luke D Lavis✫ A general method to improve fluorophores for live-cell and single-molecule microscopy Nature Methods 12(3), 244-250 (2015) (free PMC article) (cover legend) Highlighted in: Select, New Antibiotic, Unexpected Antiviral, IP7 in Cancer, and Better Dyes, Milka Kostic, Chemistry and Biology 22(2), 159-160 (2015) (paywall link)
Jiang Hao✶, Brian P English✶, Rachel Hazan, Peng Wu✫, Ben Ovryn✫ Tracking surface glycans on live cancer cells with single molecule sensitivity Angewandte Chemie International Edition 54(6), 1765–1769 (2015) (free PMC article) Highlighted in: C&EN News: Single
Glycoproteins Caught In Motion 93(1), 21 (2015) (paywall link)  Bi-Chang Chen✶, Wesley R Legant✶, Kai Wang✶, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer III, Zhe Liu, Brian P English, Yuko Mimori-Kiyosue, Daniel P Romero, Alex T Ritter, Jennifer Lippincott-Schwartz, Lillian Fritz-Laylin, R Dyche Mullins, Diana M Mitchell, Joshua N Bembenek, Anne-Cecile Reymann, Ralph Böhme, Stephan W Grill, Jennifer T Wang, Geraldine Seydoux, U Serdar Tulu, Daniel P Kiehart, Eric Betzig
Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution Science 346(6208), 1257998 (2014) (free PMC article) (cover legend) Kiryl D Piatkevich, Brian P English, Vladimir N Malashkevich, Hui Xiao, Steven C Almo, Robert H Singer & Vladislav V Verkhusha Photoswitchable Red Fluorescent Protein with a Large Stokes Shift Chemistry & Biology 21, 1402–1414 (2014) (open access)Viktoriya Shyp, Stoyan Tankov, Andrey Ermakov, Pavel Kudrin, Brian P English, Måns Ehrenberg, Tanel Tenson, Johan Elf & Vasili Hauryliuk Positive allosteric feedback regulation of the stringent response enzyme RelA by its product EMBO Reports 13(9), 835-839 (2012) (open access) Discussed in:Research Highlights, Positively alarming, Catherine Goodman, Nature Chemical Biology 8 (2012) (link) Anton Kuzemenko✶, Stoyan Tankov✶, Brian P English✶, Ivan Tarassov, Tanel Tenson, Piotr Kamenski, Johan Elf & Vasili Hauryliuk Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40 Scientific Reports 1, 195; 10.1038/srep00195 (2011) (open access) (SGD curated paper) Brian P English, Vasili Hauryliuk✶, Arash Sanamrad✶, Stoyan Tankov, Nynke Dekker & Johan Elf Single Molecule Investigations of the Stringent Response Machinery in Living Bacterial Cells Proceedings of the National Academy of Sciences 108(31), E365-73 (2011) (open access) Discussed in: Signalling in space and time: systems dynamics of intracellular communication, Shelly Tzlil & Rejji Kuruvilla, EMBO reports 12 (2011) (link) In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis, Corey E Perez & Ruben L Gonzalez Jr, Current Opinion in Chemical Biology 15 (2011) (paywall link) Featured on the HFSP homepage (link) Brian P English✶, Arash Sanamrad✶, Stoyan Tankov, Vasili Hauryliuk & Johan Elf Tracking of individual freely diffusing fluorescent protein molecules in the bacterial cytoplasm arXiv, 1003.2110v1 [q-bio.QM] (2010) (pdf) 
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited Nature Chemical Biology 2, 87-94 (2006) (paywall link) (pdf) Discussed
in: Michaelis-Menten
is dead, long live Michaelis-Menten!, Nils G. Walter, Nature
Chemical Biology 2 (2006) (pdf) Physics Update: Zooming in on Enzyme Kinetics, Stephen G. Benka, Physics Today (April, 2006) (pdf) Wei Min, Irina V Gopich, Brian P English, S C Kou, X Sunney Xie & Attila Szabo When does the Michaelis-Menten equation hold for fluctuating enzymes? The Journal of Physical Chemistry B 110, 20093-20097 (2006) (paywall link) (pdf)  S C Kou, Binny J Cherayil, Wei Min, Brian P English & X Sunney Xie Single-Molecule Michaelis-Menten Equations The Journal of Physical Chemistry B 109, 19068-19081 (2005) (paywall link) (cover legend) (pdf) Wei Min, Brian P English, Guobin Luo, Binny J Cherayil, S C Kou & X Sunney Xie Fluctuating Enzymes: Lessons from Single-Molecule Studies Accounts of Chemical Research 38, 923-931 (2005) (paywall link) (pdf) Brian P English, Ervin Welker, Mahesh Narayan & Harold A Scheraga Development of a Novel Method To Populate Native Disulfide-Bonded Intermediates for Structural Characterization of Proteins: Implications for the Mechanism of Oxidative Folding of RNase A Journal of the American Chemical Society 124, 4995-4999 (2002) (paywall link) (pdf) |
